Software

HyDe

Detection of hybridization in phylogenomic data sets using phylogenetic invariants. [GitHub :: docs]


QCF

Estimating quartet concordance factors from multilocus sequence data for species tree and network inference. [GitHub :: docs]


EBG

Empirical Bayes genotyping of biallelic SNPs in polyploids. [GitHub :: docs]


Fluidigm2PURC

Automated processing of double-barcoded PCR amplicons. [GitHub :: docs]


Polyfreqs

DEPRECATED: superseded by EBG (see above).

An R package for Bayesian population genomics in autopolyploids. [CRAN :: GitHub :: docs]

  • Install from CRAN: install.packages("polyfreqs").

  • The latest developmental version can also be installed directly from GitHub using the devtools package: devtools::install_github("pblischak/polyfreqs").