Publications

Google Scholar

  1. Grindstaff, B.\(^{\ddagger}\), M. E. Mabry, P. D. Blischak, M. Quinn, and J. C. Pires. In Review Affordable remote monitoring of plant growth and facilities using Raspberry Pi computers. \(^{\ddagger}\)Undergraduate author. [preprint :: GitHub]

  2. Titus, B. M., P. D. Blischak, and M. Daly. In Review. Genomic signatures of sympatric speciation with historical and contemporary gene flow in a tropical anthozoan. [preprint :: GitHub]

  3. Blischak, P. D.*, M. E. Mabry*, G. C. Conant, and J. C. Pires. 2019. Integrating networks, phylogenomics, and population genomics for the study of polyploidy. Annual Review of Ecology, Evolution, and Systematics 49:253–278. *Co-first authors. [link]

  4. Blischak, P. D., J. Chifman, A. D. Wolfe, and L. S. Kubatko. 2018. HyDe: a Python package for genome-scale hybridization detection. Systematic Biology 67:821–829. [link :: preprint :: GitHub]

  5. Blischak, P. D., M. Latvis, D. F. Morales-Briones, J. C. Johnson, V. S. Di Stilio, A. D. Wolfe, and D. C. Tank. 2018. Fluidigm2PURC: automated processing and haplotype inference for double-barcoded PCR amplicons. Applications in Plant Sciences 6:e1156. [link :: preprint :: GitHub :: Docker]

  6. Blischak, P. D., L. S. Kubatko, and A. D. Wolfe. 2018. SNP genotyping and parameter estimation in polyploids using low-coverage sequencing data. Bioinformatics 34:407–415. [link :: preprint :: GitHub]

  7. Latvis, M., S. J. Jacobs, S. M. E. Mortimer, M. Richards, P. D. Blischak, S. Mathews, and D. C. Tank. 2017. Primers for Castilleja and their utility across Orobanchaceae: II. single-copy nuclear loci. Applications in Plant Sciences 5:1700038. [link]

  8. Wolfe, A. D., T. Necamp, S. Fassnacht, P. D. Blischak, and L. S. Kubatko. 2016. Population genetics of Penstemon albomarginatus (Plantaginaceae), a rare Mojave Desert species of conservation concern. Conservation Genetics 17:1245–1255. [link]

  9. Blischak, P. D., L. S. Kubatko, and A. D. Wolfe. 2016. Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids. Molecular Ecology Resources 16:742–754. [link :: preprint :: Dryad :: GitHub]

  10. Blischak, P. D., A. J. Wenzel, and A. D. Wolfe. 2014. Gene prediction and annotation in Penstemon (Plantaginaceae): a workflow for marker development from extremely low-coverage genome sequencing. Applications in Plant Sciences 2:1400044. [link :: Dryad]

Talks

*presenting author, \(^{\ddagger}\)undergraduate author.

2017

  • Blischak, P. D.*, J. Chifman, A. D. Wolfe, and L. S. Kubatko. Detecting hybridization using phylogenetic invariants. Evolution 2017. Portland, OR. [figshare :: YouTube]

  • Blischak, P. D.* and L. S. Kubatko. 2017. Hybridization detection with HyDe. Evolution 2017. Portland, OR. [figshare :: YouTube]

2016

  • Blischak, P. D.*, L. S. Kubatko, and A. D. Wolfe. June 2016. Developing models for genotype uncertainty, inbreeding, and allelic inheritance in non-model polyploids. Evolution 2016. Austin, TX. [figshare]

  • Blischak, P. D.* Hierarchical models for genotype uncertainty in autopolyploids. NHS meeting, Dept. of Human Genetics, Univ. of Chicago. Chicago, IL.

2015

  • Blischak, P. D.*, L. S. Kubatko, and A. D. Wolfe. Estimating allele frequencies in non-model autopolyploids using high throughput sequencing data. Botany 2015. Edmonton, Alberta. [figshare :: GitHub]

  • Wolfe, A. D.*, B. Stone\(^{\ddagger}\), N. Padmalwar\(^{\ddagger}\), P. D. Blischak, and L. S. Kubatko. Hyobanche sanguinea (Orobanchaceae): there’s more than meets the eye. Botany 2015. Edmonton, Alberta.

  • Zacarias-Correa, A. G., A. J. Wenzel, P. D. Blischak, A. D. Wolfe*, E. P. Calix, and M.-S. Perez. Molecular phylogeny of Penstemon section Fasciculus (Plantaginaceae) based on single copy orthologous genes (COSII). Botany 2015. Edmonton, Alberta.

2014

  • Blischak, P. D.*, A. D. Wolfe, and L. S. Kubatko. Inferring large phylogenies under the coalescent model using SNPs from next-generation sequencing data. Botany 2014. Boise, ID. [figshare]

  • Wolfe, A. D.* and P. D. Blischak. Patterns of diversity in Penstemon (Plantaginaceae). Botany 2014. Boise, ID.

2013

  • Blischak, P. D., A. J. Wenzel, M. R. Stevens, and A. D. Wolfe. How low can you go? Gene predictions and putative annotations in four species of Penstemon (Plantaginaceae) from ultra low-coverage 454 sequencing. Botany 2013. New Orleans, LA.

  • Wenzel, A. J.*, P. D. Blischak, and A. D. Wolfe. Molecular phylogenetic analysis of Penstemon (Plantaginaceae) section Ericopsis: evaluating relationships and taxonomic affinities. Botany 2013. New Orleans, LA.